Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB38RAB38, member RAS oncogene family. (211 aa)    
Predicted Functional Partners:
RAB32
RAB32, member RAS oncogene family.
   
  0.965
ANKRD27
Ankyrin repeat domain 27.
    
 
 0.894
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.877
TYRP1
Tyrosinase related protein 1.
      
 0.867
GAK
Cyclin G associated kinase.
    
 
 0.863
HPS1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
    
 0.838
CHML
CHM like Rab escort protein.
    
 0.804
CHM
CHM Rab escort protein.
    
 0.804
OCA2
OCA2 melanosomal transmembrane protein.
      
 0.738
TYR
Tyrosinase.
   
  
 0.703
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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