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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB38RAB38, member RAS oncogene family. (211 aa)    
Predicted Functional Partners:
TYRP1
Tyrosinase related protein 1.
   
  
 0.886
ANKRD27
Ankyrin repeat domain 27.
    
 
 0.831
HPS1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.827
VAMP7
Vesicle associated membrane protein 7.
    
 
 0.775
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.766
TYR
Tyrosinase.
   
  
 0.755
GAK
Cyclin G associated kinase.
    
 
 0.733
OCA2
OCA2 melanosomal transmembrane protein.
      
 0.716
HPS3
HPS3 biogenesis of lysosomal organelles complex 2 subunit 1.
      
 0.701
RAB32
RAB32, member RAS oncogene family.
  
 
 
0.695
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.