Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USP39Ubiquitin specific peptidase 39. (565 aa)    
Predicted Functional Partners:
PRPF8
pre-mRNA processing factor 8.
   
 0.992
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.991
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.983
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.981
PRPF31
pre-mRNA processing factor 31.
   
 0.981
DDX23
DEAD-box helicase 23.
   
 0.981
PRPF6
pre-mRNA processing factor 6.
    
 0.974
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.969
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.967
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.966
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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