Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMO1LIM domain only 1. (156 aa)    
Predicted Functional Partners:
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
    
 0.951
LDB1
LIM domain binding 1.
    
 0.947
LDB2
LIM domain binding 2.
    
 0.935
LHX9
LIM homeobox 9.
   
 
 0.818
LHX2
LIM homeobox 2.
   
 
 0.818
MFNG
MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.
    
 
 0.787
LFNG
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.
    
 
 0.787
RFNG
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.
    
 
 0.787
GATA3
GATA binding protein 3.
    
 0.787
SSBP2
Single stranded DNA binding protein 2.
    
 
 0.763
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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