ENSCWAP00000006100 protein (Catagonus wagneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCWAP00000006100

annotation not available (254 aa)

Predicted Functional Partners:

CYLD

0.900

IKBKB

0.779

CHUK

0.779

RELB

0.769

RELA

0.769

REL

0.769

MAP3K8

0.731

NFKB1

0.725

NFKB2

0.725

TNF

0.719

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHUK	CYLD	ENSCWAP00000024643	ENSCWAP00000003711	Component of inhibitor of nuclear factor kappa B kinase complex.	CYLD lysine 63 deubiquitinase.	0.929
CHUK	ENSCWAP00000006100	ENSCWAP00000024643	ENSCWAP00000006100	Component of inhibitor of nuclear factor kappa B kinase complex.	annotation not available	0.779
CHUK	IKBKB	ENSCWAP00000024643	ENSCWAP00000013876	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.999
CHUK	MAP3K8	ENSCWAP00000024643	ENSCWAP00000025234	Component of inhibitor of nuclear factor kappa B kinase complex.	Mitogen-activated protein kinase kinase kinase 8.	0.913
CHUK	NFKB1	ENSCWAP00000024643	ENSCWAP00000012645	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor kappa B subunit 1.	0.998
CHUK	NFKB2	ENSCWAP00000024643	ENSCWAP00000018236	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor kappa B subunit 2.	0.998
CHUK	REL	ENSCWAP00000024643	ENSCWAP00000017410	Component of inhibitor of nuclear factor kappa B kinase complex.	REL proto-oncogene, NF-kB subunit.	0.987
CHUK	RELA	ENSCWAP00000024643	ENSCWAP00000014012	Component of inhibitor of nuclear factor kappa B kinase complex.	RELA proto-oncogene, NF-kB subunit.	0.998
CHUK	RELB	ENSCWAP00000024643	ENSCWAP00000008592	Component of inhibitor of nuclear factor kappa B kinase complex.	RELB proto-oncogene, NF-kB subunit.	0.994
CHUK	TNF	ENSCWAP00000024643	ENSCWAP00000007078	Component of inhibitor of nuclear factor kappa B kinase complex.	Tumor necrosis factor.	0.989
CYLD	CHUK	ENSCWAP00000003711	ENSCWAP00000024643	CYLD lysine 63 deubiquitinase.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.929
CYLD	ENSCWAP00000006100	ENSCWAP00000003711	ENSCWAP00000006100	CYLD lysine 63 deubiquitinase.	annotation not available	0.900
CYLD	IKBKB	ENSCWAP00000003711	ENSCWAP00000013876	CYLD lysine 63 deubiquitinase.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.938
CYLD	NFKB1	ENSCWAP00000003711	ENSCWAP00000012645	CYLD lysine 63 deubiquitinase.	Nuclear factor kappa B subunit 1.	0.859
CYLD	NFKB2	ENSCWAP00000003711	ENSCWAP00000018236	CYLD lysine 63 deubiquitinase.	Nuclear factor kappa B subunit 2.	0.783
CYLD	RELB	ENSCWAP00000003711	ENSCWAP00000008592	CYLD lysine 63 deubiquitinase.	RELB proto-oncogene, NF-kB subunit.	0.446
CYLD	TNF	ENSCWAP00000003711	ENSCWAP00000007078	CYLD lysine 63 deubiquitinase.	Tumor necrosis factor.	0.987
ENSCWAP00000006100	CHUK	ENSCWAP00000006100	ENSCWAP00000024643	annotation not available	Component of inhibitor of nuclear factor kappa B kinase complex.	0.779
ENSCWAP00000006100	CYLD	ENSCWAP00000006100	ENSCWAP00000003711	annotation not available	CYLD lysine 63 deubiquitinase.	0.900
ENSCWAP00000006100	IKBKB	ENSCWAP00000006100	ENSCWAP00000013876	annotation not available	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.779