TSSK1B protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TSSK1B

Testis specific serine kinase 1B. (358 aa)

Predicted Functional Partners:

APPL1

0.883

APPL2

0.883

ENSCWAP00000012931

0.792

PRKAB1

0.773

PRKAB2

0.773

STK11

0.768

SNX24

0.758

GAPVD1

0.758

MTOR

0.751

PRKAG1

0.736

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APPL1	APPL2	ENSCWAP00000027518	ENSCWAP00000028547	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	0.992
APPL1	STK11	ENSCWAP00000027518	ENSCWAP00000003959	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.	Serine/threonine kinase 11.	0.934
APPL1	TSSK1B	ENSCWAP00000027518	ENSCWAP00000006239	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.	Testis specific serine kinase 1B.	0.883
APPL2	APPL1	ENSCWAP00000028547	ENSCWAP00000027518	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.	0.992
APPL2	STK11	ENSCWAP00000028547	ENSCWAP00000003959	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	Serine/threonine kinase 11.	0.890
APPL2	TSSK1B	ENSCWAP00000028547	ENSCWAP00000006239	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	Testis specific serine kinase 1B.	0.883
ENSCWAP00000012931	MTOR	ENSCWAP00000012931	ENSCWAP00000007827	annotation not available	Mechanistic target of rapamycin kinase.	0.999
ENSCWAP00000012931	PRKAB1	ENSCWAP00000012931	ENSCWAP00000010094	annotation not available	Protein kinase AMP-activated non-catalytic subunit beta 1.	0.977
ENSCWAP00000012931	PRKAB2	ENSCWAP00000012931	ENSCWAP00000019322	annotation not available	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.976
ENSCWAP00000012931	PRKAG1	ENSCWAP00000012931	ENSCWAP00000026022	annotation not available	Protein kinase AMP-activated non-catalytic subunit gamma 1.	0.974
ENSCWAP00000012931	STK11	ENSCWAP00000012931	ENSCWAP00000003959	annotation not available	Serine/threonine kinase 11.	0.872
ENSCWAP00000012931	TSSK1B	ENSCWAP00000012931	ENSCWAP00000006239	annotation not available	Testis specific serine kinase 1B.	0.792
GAPVD1	SNX24	ENSCWAP00000020347	ENSCWAP00000002843	GTPase activating protein and VPS9 domains 1.	Sorting nexin 24.	0.948
GAPVD1	TSSK1B	ENSCWAP00000020347	ENSCWAP00000006239	GTPase activating protein and VPS9 domains 1.	Testis specific serine kinase 1B.	0.758
MTOR	ENSCWAP00000012931	ENSCWAP00000007827	ENSCWAP00000012931	Mechanistic target of rapamycin kinase.	annotation not available	0.999
MTOR	PRKAB1	ENSCWAP00000007827	ENSCWAP00000010094	Mechanistic target of rapamycin kinase.	Protein kinase AMP-activated non-catalytic subunit beta 1.	0.959
MTOR	PRKAB2	ENSCWAP00000007827	ENSCWAP00000019322	Mechanistic target of rapamycin kinase.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.954
MTOR	PRKAG1	ENSCWAP00000007827	ENSCWAP00000026022	Mechanistic target of rapamycin kinase.	Protein kinase AMP-activated non-catalytic subunit gamma 1.	0.958
MTOR	STK11	ENSCWAP00000007827	ENSCWAP00000003959	Mechanistic target of rapamycin kinase.	Serine/threonine kinase 11.	0.859
MTOR	TSSK1B	ENSCWAP00000007827	ENSCWAP00000006239	Mechanistic target of rapamycin kinase.	Testis specific serine kinase 1B.	0.751