Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX7Sorting nexin 7. (451 aa)    
Predicted Functional Partners:
SNX4
Sorting nexin 4.
   
 0.988
BLOC1S2
Biogenesis of lysosomal organelles complex 1 subunit 2.
    
 
 0.929
ENSCWAP00000028710
annotation not available
    
 
 0.929
VPS35
VPS35 retromer complex component.
   
 
 0.886
ENSCWAP00000018079
annotation not available
    
 0.867
VAMP1
Vesicle associated membrane protein 1.
    
 0.867
SNX5
Sorting nexin 5.
   
 0.860
SNX32
Sorting nexin 32.
   
 0.857
SNX6
Sorting nexin 6.
   
 0.854
DTNBP1
Dystrobrevin binding protein 1.
    
  0.848
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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