STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZFC3H1Zinc finger C3H1-type containing. (1975 aa)    
Predicted Functional Partners:
MTREX
Mtr4 exosome RNA helicase.
    
 0.997
EXOSC5
Exosome component 5.
    
 0.993
C1D
C1D nuclear receptor corepressor.
    
 0.993
EXOSC4
Exosome component 4.
    
 0.990
SRRT
Serrate, RNA effector molecule.
    
 0.967
EXOSC7
Exosome component 7.
    
 0.964
PABPN1
poly(A) binding protein nuclear 1.
    
 0.963
RBM26
RNA binding motif protein 26.
   
 0.960
ENSCWAP00000016715
annotation not available
   
 0.950
PAPOLG
poly(A) polymerase gamma.
   
 0.943
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.