Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PATL1PAT1 homolog 1, processing body mRNA decay factor. (776 aa)    
Predicted Functional Partners:
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.980
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.976
DDX6
DEAD-box helicase 6.
   
 0.974
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.969
EDC4
Enhancer of mRNA decapping 4.
    
 0.969
EDC3
Enhancer of mRNA decapping 3.
    
 0.968
DCP2
Decapping mRNA 2.
    
 0.964
DCP1A
Decapping mRNA 1A.
    
 0.963
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.960
CNOT1
CCR4-NOT transcription complex subunit 1.
    
 0.959
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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