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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTL1Retrotransposon Gag like 1. (1357 aa)    
Predicted Functional Partners:
FANCM
FA complementation group M.
    
 0.966
ERCC1
ERCC excision repair 1, endonuclease non-catalytic subunit.
    
 0.769
LDOC1
LDOC1 regulator of NFKB signaling.
    
 
0.766
KCTD19
Potassium channel tetramerization domain containing 19.
    
 
 0.765
DLK1
Delta like non-canonical Notch ligand 1.
    
 
 0.719
SGCE
Sarcoglycan epsilon.
   
  
 0.716
RPA1
Replication protein A1.
    
 0.711
LIN52
Lin-52 DREAM MuvB core complex component.
    
 0.706
LIN9
Lin-9 DREAM MuvB core complex component.
    
 0.703
CENPT
Centromere protein T.
    
 0.700
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.