Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTL1Retrotransposon Gag like 1. (1357 aa)    
Predicted Functional Partners:
CEP290
Centrosomal protein 290.
    
   0.815
FANCM
FA complementation group M.
    
 0.786
LIN52
Lin-52 DREAM MuvB core complex component.
    
 0.704
TESMIN
Testis expressed metallothionein like protein.
    
 0.681
LIN54
Lin-54 DREAM MuvB core complex component.
    
 0.681
LDOC1
LDOC1 regulator of NFKB signaling.
    
 
 0.678
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.665
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.665
LIN9
Lin-9 DREAM MuvB core complex component.
    
 0.658
IQCB1
IQ motif containing B1.
    
 
 0.649
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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