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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE4BUbiquitination factor E4B. (1295 aa)    
Predicted Functional Partners:
YOD1
YOD1 deubiquitinase.
    
 
 0.955
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.955
VCP
Valosin containing protein.
   
 
 0.955
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.922
BIRC6
Baculoviral IAP repeat containing 6.
   
 0.883
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 
 0.873
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
   
 
 0.868
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.855
FAAP100
FA core complex associated protein 100.
    
 
 0.855
UBE2Z
Ubiquitin conjugating enzyme E2 Z.
   
 0.851
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.