STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBE4BUbiquitination factor E4B. (1295 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
   
 
 0.977
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.974
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.964
ENSCWAP00000009327
annotation not available
   
 0.964
TP53
Tumor protein p53.
    
 
 0.952
YOD1
YOD1 deubiquitinase.
    
 
 0.927
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
   
 0.912
UBB
Ubiquitin B.
    
 0.912
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.909
ENSCWAP00000013737
annotation not available
    
 
 0.893
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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