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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOBPSine oculis binding protein homolog. (874 aa)    
Predicted Functional Partners:
PTK7
Protein tyrosine kinase 7 (inactive).
      
 0.681
RTN4IP1
Reticulon 4 interacting protein 1.
      
 0.630
SPRY2
Sprouty RTK signaling antagonist 2.
      
 0.618
ARHGAP20
Rho GTPase activating protein 20.
      
 0.613
VANGL2
VANGL planar cell polarity protein 2.
      
 0.613
ADAMTSL3
ADAMTS like 3.
      
 0.549
ZIC2
Zic family member 2.
      
 0.543
SEC63
SEC63 homolog, protein translocation regulator.
      
 0.537
LRG1
Leucine rich alpha-2-glycoprotein 1.
      
 0.536
ISLR
Immunoglobulin superfamily containing leucine rich repeat.
      
 0.521
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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