STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFSWAPSplicing factor SWAP. (965 aa)    
Predicted Functional Partners:
CFAP20
Cilia and flagella associated protein 20.
    
   0.927
EFHB
EF-hand domain family member B.
      
 0.851
SRRM1
Serine and arginine repetitive matrix 1.
   
 
 0.850
RBM17
RNA binding motif protein 17.
    
   0.834
SF3A3
Splicing factor 3a subunit 3.
      
 0.653
SF3A2
Splicing factor 3a subunit 2.
      
 0.638
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
  
 0.624
FBXL5
F-box and leucine rich repeat protein 5.
      
 0.612
C1QTNF7
C1q and TNF related 7.
      
 0.609
ATP6V0A1
ATPase H+ transporting V0 subunit a1.
      
 0.607
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.