Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTCD3Pentatricopeptide repeat domain 3. (686 aa)    
Predicted Functional Partners:
MRPS9
Mitochondrial ribosomal protein S9.
   
 0.996
MRPS31
Mitochondrial ribosomal protein S31.
   
 0.996
MRPS27
Mitochondrial ribosomal protein S27.
   
 0.995
CHCHD1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
    
 0.995
MRPS24
Mitochondrial ribosomal protein S24.
    
 0.994
MRPS22
Mitochondrial ribosomal protein S22.
   
 0.994
MRPS10
Mitochondrial ribosomal protein S10.
   
 0.994
MRPS7
Mitochondrial ribosomal protein S7.
   
 0.994
DAP3
Death associated protein 3.
   
 0.994
MRPS11
Mitochondrial ribosomal protein S11.
    
 0.993
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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