STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUPT16HSPT16 homolog, facilitates chromatin remodeling subunit. (1098 aa)    
Predicted Functional Partners:
SSRP1
Structure specific recognition protein 1.
   
 0.999
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.993
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.992
SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 0.991
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.985
CDC73
Cell division cycle 73.
   
 0.984
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.983
POLR2B
RNA polymerase II subunit B.
   
 0.983
POLR2C
RNA polymerase II subunit C.
   
 0.983
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.983
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.