Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRRM1Serine and arginine repetitive matrix 1. (916 aa)    
Predicted Functional Partners:
SRRM2
Serine/arginine repetitive matrix 2.
   
 0.998
RBM25
RNA binding motif protein 25.
   
 0.998
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.997
ALYREF
Aly/REF export factor.
   
 0.997
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
 0.983
PPIG
Peptidylprolyl isomerase G.
   
 0.974
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 
 0.973
SRSF11
Serine and arginine rich splicing factor 11.
   
 0.971
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.970
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.970
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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