STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XRCC1X-ray repair cross complementing 1. (629 aa)    
Predicted Functional Partners:
LIG3
DNA ligase 3.
   
 0.999
POLB
DNA polymerase beta.
    
 0.996
ENSCWAP00000007663
annotation not available
   
 0.994
PCNA
Proliferating cell nuclear antigen.
    
 0.988
APTX
Aprataxin.
    
 
 0.988
PARG
poly(ADP-ribose) glycohydrolase.
    
 
 0.987
APLF
Aprataxin and PNKP like factor.
    
 
 0.982
PARP1
poly(ADP-ribose) polymerase 1.
    
 
 0.979
TDP1
tyrosyl-DNA phosphodiesterase 1.
   
 
 0.979
XRCC6
X-ray repair cross complementing 6.
    
 
 0.976
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.