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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF6Membrane associated ring-CH-type finger 6. (910 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.988
UBE2G2
Ubiquitin conjugating enzyme E2 G2.
    
 0.959
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.947
AMFR
Autocrine motility factor receptor.
    
 0.947
SYVN1
Synoviolin 1.
    
 0.947
ENSCWAP00000024421
annotation not available
    
 0.912
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.897
VCP
Valosin containing protein.
    
 0.897
SPATA5
Spermatogenesis associated 5.
    
 0.897
UBE2J2
Ubiquitin conjugating enzyme E2 J2.
    
 
 0.885
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.