STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTN1Reticulon 1. (771 aa)    
Predicted Functional Partners:
BACE1
Beta-secretase 1.
   
 0.833
RTN4
Reticulon 4.
    
 
0.789
SPAST
Spastin.
   
 
 0.783
OMG
Oligodendrocyte myelin glycoprotein.
    
 0.764
LINGO1
Leucine rich repeat and Ig domain containing 1.
   
 0.764
VTA1
Vesicle trafficking 1.
    
   0.752
GCH1
GTP cyclohydrolase 1.
    
   0.752
TMEM33
Transmembrane protein 33.
    
 
 0.743
ATL1
Atlastin GTPase 1.
   
 
 0.739
MAPT
Microtubule associated protein tau.
   
  
 0.736
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.