STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTN1Reticulon 1. (771 aa)    
Predicted Functional Partners:
RTN4
Reticulon 4.
    
 
 0.960
MAPT
Microtubule associated protein tau.
   
 
 0.913
MANF
Mesencephalic astrocyte derived neurotrophic factor.
   
 
 0.901
RTN2
Reticulon 2.
   
 
 0.887
REEP6
Receptor accessory protein 6.
    
 
 0.837
SNX15
Sorting nexin 15.
    
 
 0.825
BACE1
Beta-secretase 1.
    
 0.821
LINGO1
Leucine rich repeat and Ig domain containing 1.
   
 0.819
BACE2
Beta-secretase 2.
    
 0.818
ATN1
Atrophin 1.
      
 0.788
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.