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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF8SR-related CTD associated factor 8. (1268 aa)    
Predicted Functional Partners:
SETX
Senataxin.
   
 0.990
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
0.979
RNMT
RNA guanine-7 methyltransferase.
   
 0.948
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.942
ENSCWAP00000004852
annotation not available
   
 
 0.939
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.929
SYMPK
Symplekin.
   
 0.928
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 0.926
TRANK1
Tetratricopeptide repeat and ankyrin repeat containing 1.
   
 0.918
FIP1L1
Factor interacting with PAPOLA and CPSF1.
   
 
 0.903
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.