STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM111BFamily with sequence similarity 111 member B. (734 aa)    
Predicted Functional Partners:
DFFB
DNA fragmentation factor subunit beta.
    
   0.658
VPS39
VPS39 subunit of HOPS complex.
      
 0.602
NUP42
Nucleoporin 42.
     
 0.592
OSTF1
Osteoclast stimulating factor 1.
      
 0.588
FBXW7
F-box and WD repeat domain containing 7.
      
 0.587
SLC25A42
Solute carrier family 25 member 42.
   
  
 0.566
RANBP2
RAN binding protein 2.
    
 0.555
NHEJ1
Non-homologous end joining factor 1.
      
 0.555
ZC4H2
Zinc finger C4H2-type containing.
      
 0.552
KBTBD13
Kelch repeat and BTB domain containing 13.
      
 0.549
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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