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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC39ATetratricopeptide repeat domain 39A. (581 aa)    
Predicted Functional Partners:
NIPAL2
NIPA like domain containing 2.
      
 0.683
ST6GALNAC4
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4.
      
 0.613
RRN3
RRN3 homolog, RNA polymerase I transcription factor.
      
 0.602
PPM1H
Protein phosphatase, Mg2+/Mn2+ dependent 1H.
      
 0.601
SUDS3
SDS3 homolog, SIN3A corepressor complex component.
      
 0.601
DCAF5
DDB1 and CUL4 associated factor 5.
      
 0.596
SLC44A1
Solute carrier family 44 member 1.
      
 0.594
TMEM30A
Transmembrane protein 30A.
      
 0.594
CTDSPL
CTD small phosphatase like.
      
 0.592
SMARCD1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
      
 0.554
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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