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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPM4Transient receptor potential cation channel subfamily M member 4. (1207 aa)    
Predicted Functional Partners:
SCN10A
Sodium voltage-gated channel alpha subunit 10.
     
 0.961
SCN3B
Sodium voltage-gated channel beta subunit 3.
     
 0.941
SCN5A
Sodium voltage-gated channel alpha subunit 5.
     
 0.918
SCN1B
Sodium voltage-gated channel beta subunit 1.
     
 0.904
SCNN1G
Sodium channel epithelial 1 gamma subunit.
     
 0.904
SCNN1B
Sodium channel epithelial 1 beta subunit.
     
 0.904
SCNN1A
Sodium channel epithelial 1 alpha subunit.
     
 0.904
SCN11A
Sodium voltage-gated channel alpha subunit 11.
     
 0.902
SCN7A
Sodium voltage-gated channel alpha subunit 7.
     
 0.899
SCN2B
Sodium voltage-gated channel beta subunit 2.
     
 0.898
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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