BBS9 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BBS9

Bardet-Biedl syndrome 9. (845 aa)

Predicted Functional Partners:

BBS4

0.999

TTC8

0.999

ENSCWAP00000009384

0.999

ENSCWAP00000014099

0.999

BBS2

0.999

BBS7

0.999

ENSCWAP00000028565

0.998

KLHL41

0.990

ARL6

0.982

LZTFL1

0.966

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL6	BBS2	ENSCWAP00000020758	ENSCWAP00000015188	ADP ribosylation factor like GTPase 6.	Bardet-Biedl syndrome 2.	0.981
ARL6	BBS4	ENSCWAP00000020758	ENSCWAP00000006359	ADP ribosylation factor like GTPase 6.	Bardet-Biedl syndrome 4.	0.977
ARL6	BBS7	ENSCWAP00000020758	ENSCWAP00000024478	ADP ribosylation factor like GTPase 6.	Bardet-Biedl syndrome 7.	0.999
ARL6	BBS9	ENSCWAP00000020758	ENSCWAP00000006805	ADP ribosylation factor like GTPase 6.	Bardet-Biedl syndrome 9.	0.982
ARL6	ENSCWAP00000009384	ENSCWAP00000020758	ENSCWAP00000009384	ADP ribosylation factor like GTPase 6.	annotation not available	0.981
ARL6	ENSCWAP00000014099	ENSCWAP00000020758	ENSCWAP00000014099	ADP ribosylation factor like GTPase 6.	annotation not available	0.999
ARL6	ENSCWAP00000028565	ENSCWAP00000020758	ENSCWAP00000028565	ADP ribosylation factor like GTPase 6.	annotation not available	0.933
ARL6	KLHL41	ENSCWAP00000020758	ENSCWAP00000009471	ADP ribosylation factor like GTPase 6.	Kelch like family member 41.	0.668
ARL6	LZTFL1	ENSCWAP00000020758	ENSCWAP00000023350	ADP ribosylation factor like GTPase 6.	Leucine zipper transcription factor like 1.	0.790
ARL6	TTC8	ENSCWAP00000020758	ENSCWAP00000009358	ADP ribosylation factor like GTPase 6.	Tetratricopeptide repeat domain 8.	0.984
BBS2	ARL6	ENSCWAP00000015188	ENSCWAP00000020758	Bardet-Biedl syndrome 2.	ADP ribosylation factor like GTPase 6.	0.981
BBS2	BBS4	ENSCWAP00000015188	ENSCWAP00000006359	Bardet-Biedl syndrome 2.	Bardet-Biedl syndrome 4.	0.999
BBS2	BBS7	ENSCWAP00000015188	ENSCWAP00000024478	Bardet-Biedl syndrome 2.	Bardet-Biedl syndrome 7.	0.999
BBS2	BBS9	ENSCWAP00000015188	ENSCWAP00000006805	Bardet-Biedl syndrome 2.	Bardet-Biedl syndrome 9.	0.999
BBS2	ENSCWAP00000009384	ENSCWAP00000015188	ENSCWAP00000009384	Bardet-Biedl syndrome 2.	annotation not available	0.999
BBS2	ENSCWAP00000014099	ENSCWAP00000015188	ENSCWAP00000014099	Bardet-Biedl syndrome 2.	annotation not available	0.999
BBS2	ENSCWAP00000028565	ENSCWAP00000015188	ENSCWAP00000028565	Bardet-Biedl syndrome 2.	annotation not available	0.998
BBS2	KLHL41	ENSCWAP00000015188	ENSCWAP00000009471	Bardet-Biedl syndrome 2.	Kelch like family member 41.	0.989
BBS2	LZTFL1	ENSCWAP00000015188	ENSCWAP00000023350	Bardet-Biedl syndrome 2.	Leucine zipper transcription factor like 1.	0.972
BBS2	TTC8	ENSCWAP00000015188	ENSCWAP00000009358	Bardet-Biedl syndrome 2.	Tetratricopeptide repeat domain 8.	0.999