Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PUS1Pseudouridine synthase 1. (433 aa)    
Predicted Functional Partners:
WDR4
WD repeat domain 4.
   
 
 0.979
TRUB1
TruB pseudouridine synthase family member 1.
   
 0.970
DKC1
Dyskerin pseudouridine synthase 1.
   
 0.961
TRUB2
TruB pseudouridine synthase family member 2.
   
 0.891
ENSCWAP00000021441
annotation not available
  
 
 0.881
WDR12
WD repeat domain 12.
   
 
 0.880
XPOT
Exportin for tRNA.
   
 
 0.872
MRPS9
Mitochondrial ribosomal protein S9.
  
 
 0.864
TSFM
Ts translation elongation factor, mitochondrial.
  
 
 0.853
METTL15
Methyltransferase like 15.
  
 
 0.851
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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