Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PLAURPlasminogen activator, urokinase receptor. (329 aa)    
Predicted Functional Partners:
PLAU
Plasminogen activator, urokinase.
   
 0.999
PLAT
Plasminogen activator, tissue type.
   
 0.990
VTN
Vitronectin.
    
 0.961
SERPINE1
Serpin family E member 1.
   
 0.900
PLG
Plasminogen.
    
 0.892
SERPINB2
Serpin family B member 2.
   
 0.849
SELENBP1
Selenium binding protein 1.
    
 
 0.819
VMA21
Vacuolar ATPase assembly factor VMA21.
    
   0.810
SCAF4
SR-related CTD associated factor 4.
    
   0.807
SERPINE2
Serpin family E member 2.
   
 0.751
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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