Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GFI1BGrowth factor independent 1B transcriptional repressor. (362 aa)    
Predicted Functional Partners:
KDM1A
Lysine demethylase 1A.
    
 0.905
RCOR1
REST corepressor 1.
    
 0.880
GATA1
GATA binding protein 1.
   
 0.772
EHMT2
Euchromatic histone lysine methyltransferase 2.
   
 
 0.714
RUNX1
RUNX family transcription factor 1.
    
 0.677
CEBPE
CCAAT enhancer binding protein epsilon.
    
 0.677
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 0.673
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.641
GATA2
GATA binding protein 2.
    
 0.626
RCOR3
REST corepressor 3.
    
 0.618
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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