STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM42RNA binding motif protein 42. (477 aa)    
Predicted Functional Partners:
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.979
TXNL4A
Thioredoxin like 4A.
   
  0.971
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
    
 
 0.967
HAUS6
HAUS augmin like complex subunit 6.
   
 0.965
HAUS3
HAUS augmin like complex subunit 3.
   
 0.964
HAUS8
HAUS augmin like complex subunit 8.
    
 0.962
PRPF3
pre-mRNA processing factor 3.
   
  0.960
PRPF31
pre-mRNA processing factor 31.
   
 0.959
USP39
Ubiquitin specific peptidase 39.
   
  0.953
ENSCWAP00000027172
annotation not available
   
 0.953
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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