Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTBLymphotoxin beta. (246 aa)    
Predicted Functional Partners:
LTA
Lymphotoxin alpha.
   
 0.998
LTBR
Lymphotoxin beta receptor.
    
 0.997
TNFSF13B
TNF superfamily member 13b.
   
 
 0.758
ENSCWAP00000014628
annotation not available
   
 0.757
CD40
CD40 molecule.
   
 0.754
TNFSF14
TNF superfamily member 14.
    
 0.749
TNFRSF11B
TNF receptor superfamily member 11b.
    
 0.744
CD40LG
CD40 ligand.
   
 
 0.689
ENSCWAP00000008937
annotation not available
     
 0.675
ENSCWAP00000008953
annotation not available
     
 0.675
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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