Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA5ASemaphorin 5A. (1073 aa)    
Predicted Functional Partners:
PLXNB3
Plexin B3.
    
 0.941
SEMA5B
Semaphorin 5B.
     
  0.890
PLXNC1
Plexin C1.
    
 0.847
PLXNB1
Plexin B1.
    
 0.831
PLXNA1
Plexin A1.
    
 0.820
NRP1
Neuropilin 1.
    
 0.811
PLXNA3
Plexin A3.
    
 0.746
PLXND1
Plexin D1.
    
 0.733
PLXNA2
Plexin A2.
    
 0.699
PLXNA4
Plexin A4.
    
 0.688
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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