TNF protein (Catagonus wagneri) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

TNF

Tumor necrosis factor. (233 aa)

Predicted Functional Partners:

TNFRSF1A

0.998

NFKB1

0.997

RELA

0.997

ENSCWAP00000008937

0.994

ENSCWAP00000008953

0.994

TNFAIP3

0.992

TRADD

0.991

IKBKB

0.990

TRAF6

0.990

RIPK1

0.989

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCWAP00000008937	ENSCWAP00000008953	ENSCWAP00000008937	ENSCWAP00000008953	annotation not available	annotation not available	0.887
ENSCWAP00000008937	NFKB1	ENSCWAP00000008937	ENSCWAP00000012645	annotation not available	Nuclear factor kappa B subunit 1.	0.404
ENSCWAP00000008937	TNF	ENSCWAP00000008937	ENSCWAP00000007078	annotation not available	Tumor necrosis factor.	0.994
ENSCWAP00000008937	TNFRSF1A	ENSCWAP00000008937	ENSCWAP00000025018	annotation not available	TNF receptor superfamily member 1A.	0.982
ENSCWAP00000008937	TRADD	ENSCWAP00000008937	ENSCWAP00000026949	annotation not available	TNFRSF1A associated via death domain.	0.838
ENSCWAP00000008937	TRAF6	ENSCWAP00000008937	ENSCWAP00000028672	annotation not available	TNF receptor associated factor 6.	0.667
ENSCWAP00000008953	ENSCWAP00000008937	ENSCWAP00000008953	ENSCWAP00000008937	annotation not available	annotation not available	0.887
ENSCWAP00000008953	NFKB1	ENSCWAP00000008953	ENSCWAP00000012645	annotation not available	Nuclear factor kappa B subunit 1.	0.404
ENSCWAP00000008953	TNF	ENSCWAP00000008953	ENSCWAP00000007078	annotation not available	Tumor necrosis factor.	0.994
ENSCWAP00000008953	TNFRSF1A	ENSCWAP00000008953	ENSCWAP00000025018	annotation not available	TNF receptor superfamily member 1A.	0.982
ENSCWAP00000008953	TRADD	ENSCWAP00000008953	ENSCWAP00000026949	annotation not available	TNFRSF1A associated via death domain.	0.838
ENSCWAP00000008953	TRAF6	ENSCWAP00000008953	ENSCWAP00000028672	annotation not available	TNF receptor associated factor 6.	0.667
IKBKB	NFKB1	ENSCWAP00000013876	ENSCWAP00000012645	Inhibitor of nuclear factor kappa B kinase subunit beta.	Nuclear factor kappa B subunit 1.	0.998
IKBKB	RELA	ENSCWAP00000013876	ENSCWAP00000014012	Inhibitor of nuclear factor kappa B kinase subunit beta.	RELA proto-oncogene, NF-kB subunit.	0.998
IKBKB	RIPK1	ENSCWAP00000013876	ENSCWAP00000013041	Inhibitor of nuclear factor kappa B kinase subunit beta.	Receptor interacting serine/threonine kinase 1.	0.995
IKBKB	TNF	ENSCWAP00000013876	ENSCWAP00000007078	Inhibitor of nuclear factor kappa B kinase subunit beta.	Tumor necrosis factor.	0.990
IKBKB	TNFAIP3	ENSCWAP00000013876	ENSCWAP00000002773	Inhibitor of nuclear factor kappa B kinase subunit beta.	TNF alpha induced protein 3.	0.969
IKBKB	TNFRSF1A	ENSCWAP00000013876	ENSCWAP00000025018	Inhibitor of nuclear factor kappa B kinase subunit beta.	TNF receptor superfamily member 1A.	0.997
IKBKB	TRADD	ENSCWAP00000013876	ENSCWAP00000026949	Inhibitor of nuclear factor kappa B kinase subunit beta.	TNFRSF1A associated via death domain.	0.948
IKBKB	TRAF6	ENSCWAP00000013876	ENSCWAP00000028672	Inhibitor of nuclear factor kappa B kinase subunit beta.	TNF receptor associated factor 6.	0.997