Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTALymphotoxin alpha. (204 aa)    
Predicted Functional Partners:
LTB
Lymphotoxin beta.
   
 0.998
TNFRSF1A
TNF receptor superfamily member 1A.
    
 0.997
LTBR
Lymphotoxin beta receptor.
    
 0.995
ENSCWAP00000008937
annotation not available
    
 0.989
ENSCWAP00000008953
annotation not available
    
 0.989
TNF
Tumor necrosis factor.
   
 0.928
TNFSF14
TNF superfamily member 14.
     
 0.853
TNFRSF25
TNF receptor superfamily member 25.
    
 0.846
PLEKHG5
Pleckstrin homology and RhoGEF domain containing G5.
    
 0.839
PLEKHG6
Pleckstrin homology and RhoGEF domain containing G6.
    
 0.839
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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