RNF32 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RNF32

Ring finger protein 32. (360 aa)

Predicted Functional Partners:

ENSCWAP00000026989

0.738

UBA52

0.732

LZTS3

0.683

NOM1

0.656

KIAA0100

0.628

ENSCWAP00000006692

0.616

RPS27A

0.616

ENSCWAP00000022461

0.616

C2CD5

0.611

LMBR1

0.602

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2CD5	RNF32	ENSCWAP00000025402	ENSCWAP00000007130	C2 calcium dependent domain containing 5.	Ring finger protein 32.	0.611
ENSCWAP00000006692	ENSCWAP00000026989	ENSCWAP00000006692	ENSCWAP00000026989	annotation not available	annotation not available	0.958
ENSCWAP00000006692	RNF32	ENSCWAP00000006692	ENSCWAP00000007130	annotation not available	Ring finger protein 32.	0.616
ENSCWAP00000006692	UBA52	ENSCWAP00000006692	ENSCWAP00000024723	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.997
ENSCWAP00000022461	ENSCWAP00000026989	ENSCWAP00000022461	ENSCWAP00000026989	annotation not available	annotation not available	0.958
ENSCWAP00000022461	RNF32	ENSCWAP00000022461	ENSCWAP00000007130	annotation not available	Ring finger protein 32.	0.616
ENSCWAP00000022461	UBA52	ENSCWAP00000022461	ENSCWAP00000024723	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.997
ENSCWAP00000026989	ENSCWAP00000006692	ENSCWAP00000026989	ENSCWAP00000006692	annotation not available	annotation not available	0.958
ENSCWAP00000026989	ENSCWAP00000022461	ENSCWAP00000026989	ENSCWAP00000022461	annotation not available	annotation not available	0.958
ENSCWAP00000026989	RNF32	ENSCWAP00000026989	ENSCWAP00000007130	annotation not available	Ring finger protein 32.	0.738
ENSCWAP00000026989	RPS27A	ENSCWAP00000026989	ENSCWAP00000014293	annotation not available	Ribosomal protein S27a.	0.958
ENSCWAP00000026989	UBA52	ENSCWAP00000026989	ENSCWAP00000024723	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.959
KIAA0100	RNF32	ENSCWAP00000007868	ENSCWAP00000007130	KIAA0100.	Ring finger protein 32.	0.628
LMBR1	NOM1	ENSCWAP00000007219	ENSCWAP00000007455	Limb development membrane protein 1.	Nucleolar protein with MIF4G domain 1.	0.585
LMBR1	RNF32	ENSCWAP00000007219	ENSCWAP00000007130	Limb development membrane protein 1.	Ring finger protein 32.	0.602
LZTS3	RNF32	ENSCWAP00000017181	ENSCWAP00000007130	Leucine zipper tumor suppressor family member 3.	Ring finger protein 32.	0.683
NOM1	LMBR1	ENSCWAP00000007455	ENSCWAP00000007219	Nucleolar protein with MIF4G domain 1.	Limb development membrane protein 1.	0.585
NOM1	RNF32	ENSCWAP00000007455	ENSCWAP00000007130	Nucleolar protein with MIF4G domain 1.	Ring finger protein 32.	0.656
RNF32	C2CD5	ENSCWAP00000007130	ENSCWAP00000025402	Ring finger protein 32.	C2 calcium dependent domain containing 5.	0.611
RNF32	ENSCWAP00000006692	ENSCWAP00000007130	ENSCWAP00000006692	Ring finger protein 32.	annotation not available	0.616