Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZNF404Zinc finger protein 404. (552 aa)    
Predicted Functional Partners:
GTF3C3
General transcription factor IIIC subunit 3.
    
 0.678
ZNF618
Zinc finger protein 618.
    
 
 0.632
MYSM1
Myb like, SWIRM and MPN domains 1.
    
  0.629
PHF14
PHD finger protein 14.
      
 0.614
CCDC59
Coiled-coil domain containing 59.
      
 0.583
CBX8
Chromobox 8.
    
 
 0.570
CCDC85B
Coiled-coil domain containing 85B.
      
 0.527
ATM
ATM serine/threonine kinase.
    
 0.515
GART
annotation not available
     
  0.503
SUFU
SUFU negative regulator of hedgehog signaling.
    
 0.485
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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