STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCATLecithin-cholesterol acyltransferase. (440 aa)    
Predicted Functional Partners:
APOA1
Apolipoprotein A1.
   
 0.972
PEMT
Phosphatidylethanolamine N-methyltransferase.
   
 0.959
PLB1
Phospholipase B1.
     
 0.935
PLD2
Phospholipase D2.
     
 0.924
PLD1
Phospholipase D1.
     
 0.924
PNPLA6
Patatin like phospholipase domain containing 6.
     
 0.907
CEPT1
Choline/ethanolamine phosphotransferase 1.
     
 0.904
LYPLA1
Lysophospholipase 1.
     
 0.904
CHPT1
Choline phosphotransferase 1.
     
 0.904
PLD3
Phospholipase D family member 3.
   
 
 0.901
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.