Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF114Ring finger protein 114. (192 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
  0.903
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
    
 0.889
RNF166
Ring finger protein 166.
    
   0.852
TIPARP
TCDD inducible poly(ADP-ribose) polymerase.
    
   0.836
TNFAIP3
TNF alpha induced protein 3.
    
 
 0.764
TNKS
Tankyrase.
    
   0.742
ZRANB1
Zinc finger RANBP2-type containing 1.
    
   0.742
CDKN1A
Cyclin dependent kinase inhibitor 1A.
    
   0.640
DCAF11
DDB1 and CUL4 associated factor 11.
    
 
 0.640
UBE2L6
Ubiquitin conjugating enzyme E2 L6.
   
 0.632
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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