STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX39BDExD-box helicase 39B. (428 aa)    
Predicted Functional Partners:
ALYREF
Aly/REF export factor.
   
 0.990
THOC2
THO complex 2.
   
 0.984
SARNP
SAP domain containing ribonucleoprotein.
   
 0.983
THOC3
THO complex 3.
    
 0.982
THOC1
THO complex 1.
   
 0.981
THOC7
THO complex 7.
   
 0.979
THOC5
THO complex 5.
   
 0.976
THOC6
THO complex 6.
   
 0.973
RBM8A
RNA binding motif protein 8A.
   
 0.972
EIF4A3
Eukaryotic translation initiation factor 4A3.
   
 0.972
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.