Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRAF4TNF receptor associated factor 4. (470 aa)    
Predicted Functional Partners:
USP7
Ubiquitin specific peptidase 7.
    
 0.978
TRAF6
TNF receptor associated factor 6.
    
 
 0.950
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.943
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
    
 0.934
NCF1
Neutrophil cytosolic factor 1.
    
 
 0.925
TRAF3IP2
TRAF3 interacting protein 2.
    
 0.916
PSMC3
Proteasome 26S subunit, ATPase 3.
    
  0.910
TRAF1
TNF receptor associated factor 1.
   
 0.909
TRAF2
TNF receptor associated factor 2.
   
 0.909
MAP3K5
Mitogen-activated protein kinase kinase kinase 5.
    
 0.905
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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