STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMBR1Limb development membrane protein 1. (490 aa)    
Predicted Functional Partners:
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
    
 
 0.749
WNT8B
Wnt family member 8B.
      
 0.693
SLC35F3
Solute carrier family 35 member F3.
      
 0.686
SIGMAR1
Sigma non-opioid intracellular receptor 1.
    
 
 0.656
TSEN2
tRNA splicing endonuclease subunit 2.
      
 0.638
ENSCWAP00000015569
annotation not available
    
 
 0.637
FAM210B
Family with sequence similarity 210 member B.
      
 0.633
CHST4
Carbohydrate sulfotransferase 4.
     
 0.629
DNAJB2
DnaJ heat shock protein family (Hsp40) member B2.
    
 
 0.618
QSOX2
Quiescin sulfhydryl oxidase 2.
    
 
 0.616
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.