RNF103 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF103

Ring finger protein 103. (685 aa)

Predicted Functional Partners:

UBA52

0.783

MLKL

0.672

ENSCWAP00000026966

0.667

ZFAND4

0.667

ENSCWAP00000006692

0.665

RPS27A

0.665

ENSCWAP00000022461

0.665

RWDD2A

0.663

RNF170

0.662

ZBTB47

0.659

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCWAP00000006692	MLKL	ENSCWAP00000006692	ENSCWAP00000002504	annotation not available	Mixed lineage kinase domain like pseudokinase.	0.567
ENSCWAP00000006692	RNF103	ENSCWAP00000006692	ENSCWAP00000007376	annotation not available	Ring finger protein 103.	0.665
ENSCWAP00000006692	UBA52	ENSCWAP00000006692	ENSCWAP00000024723	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.996
ENSCWAP00000006692	ZFAND4	ENSCWAP00000006692	ENSCWAP00000028867	annotation not available	Zinc finger AN1-type containing 4.	0.987
ENSCWAP00000022461	MLKL	ENSCWAP00000022461	ENSCWAP00000002504	annotation not available	Mixed lineage kinase domain like pseudokinase.	0.567
ENSCWAP00000022461	RNF103	ENSCWAP00000022461	ENSCWAP00000007376	annotation not available	Ring finger protein 103.	0.665
ENSCWAP00000022461	UBA52	ENSCWAP00000022461	ENSCWAP00000024723	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.996
ENSCWAP00000022461	ZFAND4	ENSCWAP00000022461	ENSCWAP00000028867	annotation not available	Zinc finger AN1-type containing 4.	0.987
ENSCWAP00000026966	RNF103	ENSCWAP00000026966	ENSCWAP00000007376	annotation not available	Ring finger protein 103.	0.667
ENSCWAP00000026966	RWDD2A	ENSCWAP00000026966	ENSCWAP00000014088	annotation not available	RWD domain containing 2A.	0.691
ENSCWAP00000026966	ZBTB47	ENSCWAP00000026966	ENSCWAP00000019817	annotation not available	Zinc finger and BTB domain containing 47.	0.694
MLKL	ENSCWAP00000006692	ENSCWAP00000002504	ENSCWAP00000006692	Mixed lineage kinase domain like pseudokinase.	annotation not available	0.567
MLKL	ENSCWAP00000022461	ENSCWAP00000002504	ENSCWAP00000022461	Mixed lineage kinase domain like pseudokinase.	annotation not available	0.567
MLKL	RNF103	ENSCWAP00000002504	ENSCWAP00000007376	Mixed lineage kinase domain like pseudokinase.	Ring finger protein 103.	0.672
MLKL	RPS27A	ENSCWAP00000002504	ENSCWAP00000014293	Mixed lineage kinase domain like pseudokinase.	Ribosomal protein S27a.	0.567
MLKL	UBA52	ENSCWAP00000002504	ENSCWAP00000024723	Mixed lineage kinase domain like pseudokinase.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.587
RNF103	ENSCWAP00000006692	ENSCWAP00000007376	ENSCWAP00000006692	Ring finger protein 103.	annotation not available	0.665
RNF103	ENSCWAP00000022461	ENSCWAP00000007376	ENSCWAP00000022461	Ring finger protein 103.	annotation not available	0.665
RNF103	ENSCWAP00000026966	ENSCWAP00000007376	ENSCWAP00000026966	Ring finger protein 103.	annotation not available	0.667
RNF103	MLKL	ENSCWAP00000007376	ENSCWAP00000002504	Ring finger protein 103.	Mixed lineage kinase domain like pseudokinase.	0.672