STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTUD1OTU deubiquitinase 1. (474 aa)    
Predicted Functional Partners:
FLNC
Filamin C.
    
   0.922
AIFM1
Apoptosis inducing factor mitochondria associated 1.
    
   0.910
KEAP1
Kelch like ECH associated protein 1.
    
 
 0.910
RIPK1
Receptor interacting serine/threonine kinase 1.
    
 0.904
UBB
Ubiquitin B.
    
  0.863
IRF3
Interferon regulatory factor 3.
    
 
 0.840
SMAD7
SMAD family member 7.
    
 
 0.823
FLNB
Filamin B.
    
   0.811
KLHL17
Kelch like family member 17.
    
   0.783
ENSCWAP00000010110
annotation not available
      
 0.754
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.