ENSCWAP00000007488 protein (Catagonus wagneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCWAP00000007488

annotation not available (913 aa)

Predicted Functional Partners:

ZMYM2

0.654

FGFR1OP2

0.613

CNTRL

0.599

TRIM28

0.574

TRIM33

0.549

TRIM24

0.549

WWC1

0.548

ZNF608

0.531

DENND2B

0.521

SUFU

0.519

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTRL	ENSCWAP00000007488	ENSCWAP00000017476	ENSCWAP00000007488	Centriolin.	annotation not available	0.599
DENND2B	ENSCWAP00000007488	ENSCWAP00000000154	ENSCWAP00000007488	DENN domain containing 2B.	annotation not available	0.521
ENSCWAP00000007488	CNTRL	ENSCWAP00000007488	ENSCWAP00000017476	annotation not available	Centriolin.	0.599
ENSCWAP00000007488	DENND2B	ENSCWAP00000007488	ENSCWAP00000000154	annotation not available	DENN domain containing 2B.	0.521
ENSCWAP00000007488	FGFR1OP2	ENSCWAP00000007488	ENSCWAP00000027195	annotation not available	FGFR1 oncogene partner 2.	0.613
ENSCWAP00000007488	SUFU	ENSCWAP00000007488	ENSCWAP00000017392	annotation not available	SUFU negative regulator of hedgehog signaling.	0.519
ENSCWAP00000007488	TRIM24	ENSCWAP00000007488	ENSCWAP00000017458	annotation not available	Tripartite motif containing 24.	0.549
ENSCWAP00000007488	TRIM28	ENSCWAP00000007488	ENSCWAP00000022960	annotation not available	Tripartite motif containing 28.	0.574
ENSCWAP00000007488	TRIM33	ENSCWAP00000007488	ENSCWAP00000003421	annotation not available	Tripartite motif containing 33.	0.549
ENSCWAP00000007488	WWC1	ENSCWAP00000007488	ENSCWAP00000002550	annotation not available	WW and C2 domain containing 1.	0.548
ENSCWAP00000007488	ZMYM2	ENSCWAP00000007488	ENSCWAP00000008796	annotation not available	Zinc finger MYM-type containing 2.	0.654
ENSCWAP00000007488	ZNF608	ENSCWAP00000007488	ENSCWAP00000003060	annotation not available	Zinc finger protein 608.	0.531
FGFR1OP2	ENSCWAP00000007488	ENSCWAP00000027195	ENSCWAP00000007488	FGFR1 oncogene partner 2.	annotation not available	0.613
FGFR1OP2	ZMYM2	ENSCWAP00000027195	ENSCWAP00000008796	FGFR1 oncogene partner 2.	Zinc finger MYM-type containing 2.	0.521
SUFU	ENSCWAP00000007488	ENSCWAP00000017392	ENSCWAP00000007488	SUFU negative regulator of hedgehog signaling.	annotation not available	0.519
TRIM24	ENSCWAP00000007488	ENSCWAP00000017458	ENSCWAP00000007488	Tripartite motif containing 24.	annotation not available	0.549
TRIM24	TRIM28	ENSCWAP00000017458	ENSCWAP00000022960	Tripartite motif containing 24.	Tripartite motif containing 28.	0.862
TRIM24	TRIM33	ENSCWAP00000017458	ENSCWAP00000003421	Tripartite motif containing 24.	Tripartite motif containing 33.	0.880
TRIM28	ENSCWAP00000007488	ENSCWAP00000022960	ENSCWAP00000007488	Tripartite motif containing 28.	annotation not available	0.574
TRIM28	TRIM24	ENSCWAP00000022960	ENSCWAP00000017458	Tripartite motif containing 28.	Tripartite motif containing 24.	0.862