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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP15Ubiquitin specific peptidase 15. (981 aa)    
Predicted Functional Partners:
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.977
UBB
Ubiquitin B.
    
 0.959
SMAD7
SMAD family member 7.
    
 0.850
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.837
USP4
Ubiquitin specific peptidase 4.
  
 
 
0.831
TGFBR1
Transforming growth factor beta receptor 1.
    
 0.830
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.775
TRAF6
TNF receptor associated factor 6.
    
 0.773
SMAD1
SMAD family member 1.
    
 0.740
NEDD4L
NEDD4 like E3 ubiquitin protein ligase.
    
 0.738
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.