STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTF1APancreas associated transcription factor 1a. (326 aa)    
Predicted Functional Partners:
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.913
FOXN4
Forkhead box N4.
    
 
 0.908
RBPJL
Recombination signal binding protein for immunoglobulin kappa J region like.
   
 0.879
CPA1
Carboxypeptidase A1.
   
  
 0.814
BARHL2
BarH like homeobox 2.
      
 0.796
SOX9
SRY-box transcription factor 9.
      
 0.749
VSX1
Visual system homeobox 1.
      
 0.732
FOXA1
Forkhead box A1.
    
 
 0.715
NKX6-1
NK6 homeobox 1.
      
 0.687
ISL1
ISL LIM homeobox 1.
   
 0.672
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.