STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX27DEAD-box helicase 27. (763 aa)    
Predicted Functional Partners:
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.997
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.994
RBM28
RNA binding motif protein 28.
   
 
 0.993
RBM34
RNA binding motif protein 34.
   
  0.993
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.993
RPF2
Ribosome production factor 2 homolog.
   
 
 0.991
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 0.990
DDX54
DEAD-box helicase 54.
  
 
0.990
DDX18
DEAD-box helicase 18.
  
 
0.990
ENSCWAP00000003523
annotation not available
   
 0.989
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.