TARDBP protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TARDBP

TAR DNA binding protein. (414 aa)

Predicted Functional Partners:

FUS

0.995

ENSCWAP00000003047

0.993

ENSCWAP00000028050

0.989

CCNF

0.971

HSPA4

0.969

TAF15

0.961

PABPC5

0.958

EWSR1

0.949

ENSCWAP00000010327

0.943

HDAC6

0.942

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNF	ENSCWAP00000010327	ENSCWAP00000017462	ENSCWAP00000010327	Cyclin F.	annotation not available	0.534
CCNF	HSPA4	ENSCWAP00000017462	ENSCWAP00000000917	Cyclin F.	Heat shock protein family A (Hsp70) member 4.	0.405
CCNF	TARDBP	ENSCWAP00000017462	ENSCWAP00000007586	Cyclin F.	TAR DNA binding protein.	0.971
ENSCWAP00000003047	ENSCWAP00000010327	ENSCWAP00000003047	ENSCWAP00000010327	annotation not available	annotation not available	0.672
ENSCWAP00000003047	HDAC6	ENSCWAP00000003047	ENSCWAP00000015296	annotation not available	Histone deacetylase 6.	0.933
ENSCWAP00000003047	HSPA4	ENSCWAP00000003047	ENSCWAP00000000917	annotation not available	Heat shock protein family A (Hsp70) member 4.	0.946
ENSCWAP00000003047	TARDBP	ENSCWAP00000003047	ENSCWAP00000007586	annotation not available	TAR DNA binding protein.	0.993
ENSCWAP00000010327	CCNF	ENSCWAP00000010327	ENSCWAP00000017462	annotation not available	Cyclin F.	0.534
ENSCWAP00000010327	ENSCWAP00000003047	ENSCWAP00000010327	ENSCWAP00000003047	annotation not available	annotation not available	0.672
ENSCWAP00000010327	ENSCWAP00000028050	ENSCWAP00000010327	ENSCWAP00000028050	annotation not available	annotation not available	0.672
ENSCWAP00000010327	EWSR1	ENSCWAP00000010327	ENSCWAP00000020200	annotation not available	EWS RNA binding protein 1.	0.792
ENSCWAP00000010327	FUS	ENSCWAP00000010327	ENSCWAP00000006500	annotation not available	FUS RNA binding protein.	0.865
ENSCWAP00000010327	TAF15	ENSCWAP00000010327	ENSCWAP00000009690	annotation not available	TATA-box binding protein associated factor 15.	0.901
ENSCWAP00000010327	TARDBP	ENSCWAP00000010327	ENSCWAP00000007586	annotation not available	TAR DNA binding protein.	0.943
ENSCWAP00000028050	ENSCWAP00000010327	ENSCWAP00000028050	ENSCWAP00000010327	annotation not available	annotation not available	0.672
ENSCWAP00000028050	HDAC6	ENSCWAP00000028050	ENSCWAP00000015296	annotation not available	Histone deacetylase 6.	0.899
ENSCWAP00000028050	HSPA4	ENSCWAP00000028050	ENSCWAP00000000917	annotation not available	Heat shock protein family A (Hsp70) member 4.	0.946
ENSCWAP00000028050	TARDBP	ENSCWAP00000028050	ENSCWAP00000007586	annotation not available	TAR DNA binding protein.	0.989
EWSR1	ENSCWAP00000010327	ENSCWAP00000020200	ENSCWAP00000010327	EWS RNA binding protein 1.	annotation not available	0.792
EWSR1	FUS	ENSCWAP00000020200	ENSCWAP00000006500	EWS RNA binding protein 1.	FUS RNA binding protein.	0.993