Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABGGTBRab geranylgeranyltransferase subunit beta. (331 aa)    
Predicted Functional Partners:
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.997
CHML
CHM like Rab escort protein.
    
 0.973
CHM
CHM Rab escort protein.
    
 0.966
RAB1B
RAB1B, member RAS oncogene family.
    
 0.916
RAB1A
RAB1A, member RAS oncogene family.
    
 0.916
PTP4A2
Protein tyrosine phosphatase 4A2.
    
  0.915
YKT6
YKT6 v-SNARE homolog.
    
 
 0.900
ENSCWAP00000000029
annotation not available
    
  0.883
ENSCWAP00000006023
annotation not available
    
  0.883
PTP4A1
Protein tyrosine phosphatase 4A1.
    
  0.883
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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