AGO2 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGO2

Argonaute RISC catalytic component 2. (860 aa)

Predicted Functional Partners:

TARBP2

0.999

DICER1

0.999

TNRC6A

0.998

DHX9

0.994

DDX6

0.990

DROSHA

0.987

SND1

0.986

AGO1

0.983

ENSCWAP00000021392

0.983

PRKRA

0.981

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGO1	AGO2	ENSCWAP00000011549	ENSCWAP00000011732	Argonaute RISC component 1.	Argonaute RISC catalytic component 2.	0.983
AGO1	DDX6	ENSCWAP00000011549	ENSCWAP00000017939	Argonaute RISC component 1.	DEAD-box helicase 6.	0.944
AGO1	DHX9	ENSCWAP00000011549	ENSCWAP00000025547	Argonaute RISC component 1.	DExH-box helicase 9.	0.903
AGO1	DICER1	ENSCWAP00000011549	ENSCWAP00000027516	Argonaute RISC component 1.	Dicer 1, ribonuclease III.	0.988
AGO1	DROSHA	ENSCWAP00000011549	ENSCWAP00000020007	Argonaute RISC component 1.	Drosha ribonuclease III.	0.967
AGO1	ENSCWAP00000021392	ENSCWAP00000011549	ENSCWAP00000021392	Argonaute RISC component 1.	annotation not available	0.660
AGO1	PRKRA	ENSCWAP00000011549	ENSCWAP00000001771	Argonaute RISC component 1.	Protein activator of interferon induced protein kinase EIF2AK2.	0.948
AGO1	SND1	ENSCWAP00000011549	ENSCWAP00000004578	Argonaute RISC component 1.	Staphylococcal nuclease and tudor domain containing 1.	0.935
AGO1	TARBP2	ENSCWAP00000011549	ENSCWAP00000019857	Argonaute RISC component 1.	TARBP2 subunit of RISC loading complex.	0.982
AGO1	TNRC6A	ENSCWAP00000011549	ENSCWAP00000003504	Argonaute RISC component 1.	Trinucleotide repeat containing adaptor 6A.	0.928
AGO2	AGO1	ENSCWAP00000011732	ENSCWAP00000011549	Argonaute RISC catalytic component 2.	Argonaute RISC component 1.	0.983
AGO2	DDX6	ENSCWAP00000011732	ENSCWAP00000017939	Argonaute RISC catalytic component 2.	DEAD-box helicase 6.	0.990
AGO2	DHX9	ENSCWAP00000011732	ENSCWAP00000025547	Argonaute RISC catalytic component 2.	DExH-box helicase 9.	0.994
AGO2	DICER1	ENSCWAP00000011732	ENSCWAP00000027516	Argonaute RISC catalytic component 2.	Dicer 1, ribonuclease III.	0.999
AGO2	DROSHA	ENSCWAP00000011732	ENSCWAP00000020007	Argonaute RISC catalytic component 2.	Drosha ribonuclease III.	0.987
AGO2	ENSCWAP00000021392	ENSCWAP00000011732	ENSCWAP00000021392	Argonaute RISC catalytic component 2.	annotation not available	0.983
AGO2	PRKRA	ENSCWAP00000011732	ENSCWAP00000001771	Argonaute RISC catalytic component 2.	Protein activator of interferon induced protein kinase EIF2AK2.	0.981
AGO2	SND1	ENSCWAP00000011732	ENSCWAP00000004578	Argonaute RISC catalytic component 2.	Staphylococcal nuclease and tudor domain containing 1.	0.986
AGO2	TARBP2	ENSCWAP00000011732	ENSCWAP00000019857	Argonaute RISC catalytic component 2.	TARBP2 subunit of RISC loading complex.	0.999
AGO2	TNRC6A	ENSCWAP00000011732	ENSCWAP00000003504	Argonaute RISC catalytic component 2.	Trinucleotide repeat containing adaptor 6A.	0.998