STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF122Ring finger protein 122. (155 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.860
UBB
Ubiquitin B.
    
  0.845
ENSCWAP00000006692
annotation not available
    
 0.771
RPS27A
Ribosomal protein S27a.
    
 0.771
ENSCWAP00000022461
annotation not available
    
 0.771
TXLNB
Taxilin beta.
      
 0.742
FAM234A
Family with sequence similarity 234 member A.
      
 0.738
L3HYPDH
trans-L-3-hydroxyproline dehydratase.
      
 0.715
UBE2K
Ubiquitin conjugating enzyme E2 K.
    
 0.710
SMAD7
SMAD family member 7.
   
 0.694
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.