FIGNL2 protein (Catagonus wagneri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FIGNL2

Fidgetin like 2. (656 aa)

Predicted Functional Partners:

ENSCWAP00000026989

0.990

YOD1

0.872

IST1

0.858

UFD1

0.845

ENSCWAP00000007316

0.827

UBXN1

0.809

TEP1

0.803

NPLOC4

0.800

FAAP100

0.800

NAPA

0.794

Your Current Organism:

Catagonus wagneri

NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCWAP00000007316	FIGNL2	ENSCWAP00000007316	ENSCWAP00000015268	annotation not available	Fidgetin like 2.	0.827
ENSCWAP00000007316	IST1	ENSCWAP00000007316	ENSCWAP00000000402	annotation not available	IST1 factor associated with ESCRT-III.	0.959
ENSCWAP00000026989	FAAP100	ENSCWAP00000026989	ENSCWAP00000025949	annotation not available	FA core complex associated protein 100.	0.999
ENSCWAP00000026989	FIGNL2	ENSCWAP00000026989	ENSCWAP00000015268	annotation not available	Fidgetin like 2.	0.990
ENSCWAP00000026989	NPLOC4	ENSCWAP00000026989	ENSCWAP00000025893	annotation not available	NPL4 homolog, ubiquitin recognition factor.	0.999
ENSCWAP00000026989	TEP1	ENSCWAP00000026989	ENSCWAP00000015059	annotation not available	Telomerase associated protein 1.	0.773
ENSCWAP00000026989	UBXN1	ENSCWAP00000026989	ENSCWAP00000024601	annotation not available	UBX domain protein 1.	0.999
ENSCWAP00000026989	UFD1	ENSCWAP00000026989	ENSCWAP00000005903	annotation not available	Ubiquitin recognition factor in ER associated degradation 1.	0.999
FAAP100	ENSCWAP00000026989	ENSCWAP00000025949	ENSCWAP00000026989	FA core complex associated protein 100.	annotation not available	0.999
FAAP100	FIGNL2	ENSCWAP00000025949	ENSCWAP00000015268	FA core complex associated protein 100.	Fidgetin like 2.	0.800
FAAP100	UBXN1	ENSCWAP00000025949	ENSCWAP00000024601	FA core complex associated protein 100.	UBX domain protein 1.	0.878
FAAP100	UFD1	ENSCWAP00000025949	ENSCWAP00000005903	FA core complex associated protein 100.	Ubiquitin recognition factor in ER associated degradation 1.	0.991
FAAP100	YOD1	ENSCWAP00000025949	ENSCWAP00000001919	FA core complex associated protein 100.	YOD1 deubiquitinase.	0.949
FIGNL2	ENSCWAP00000007316	ENSCWAP00000015268	ENSCWAP00000007316	Fidgetin like 2.	annotation not available	0.827
FIGNL2	ENSCWAP00000026989	ENSCWAP00000015268	ENSCWAP00000026989	Fidgetin like 2.	annotation not available	0.990
FIGNL2	FAAP100	ENSCWAP00000015268	ENSCWAP00000025949	Fidgetin like 2.	FA core complex associated protein 100.	0.800
FIGNL2	IST1	ENSCWAP00000015268	ENSCWAP00000000402	Fidgetin like 2.	IST1 factor associated with ESCRT-III.	0.858
FIGNL2	NAPA	ENSCWAP00000015268	ENSCWAP00000015721	Fidgetin like 2.	NSF attachment protein alpha.	0.794
FIGNL2	NPLOC4	ENSCWAP00000015268	ENSCWAP00000025893	Fidgetin like 2.	NPL4 homolog, ubiquitin recognition factor.	0.800
FIGNL2	TEP1	ENSCWAP00000015268	ENSCWAP00000015059	Fidgetin like 2.	Telomerase associated protein 1.	0.803