STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDKAL1CDK5 regulatory subunit associated protein 1 like 1. (578 aa)    
Predicted Functional Partners:
EXOSC3
Exosome component 3.
    
 
 0.853
ENDOV
Endonuclease V.
     
 0.830
UROD
Uroporphyrinogen decarboxylase.
     
 0.830
MMS19
MMS19 homolog, cytosolic iron-sulfur assembly component.
   
 
 0.781
TRMT10A
tRNA methyltransferase 10A.
   
  
 0.700
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
  
  
 0.672
TRMO
tRNA methyltransferase O.
  
  
 0.632
CDC123
Cell division cycle 123.
      
 0.617
SLC39A5
Solute carrier family 39 member 5.
     
 0.616
TMEM38B
Transmembrane protein 38B.
      
 0.615
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.